Transcript: LINC01778:22

Basic information

LNCipedia transcript ID: LINC01778:22 
HGNC Gene Symbol: LINC01778    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1778
Ensembl Gene ID: ENSG00000223382
Ensembl Transcript ID: ENST00000438790
Location (hg38): chr1:30824675-30833733
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 446 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438790; ENST00000438790.1; RP1-65J11.1-001; OTTHUMT00000010557.3; NONHSAT002066
Alternative gene names: ENSG00000223382; RP1-65J11.1; ENSG00000223382.1; OTTHUMG00000003749.3; ENSG00000223382.3; ENSG00000223382.4; RP5-1125N11.2; LINC01778


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -287.2953 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01778:22 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZCCHC17-2:2
3.1 lnc-ZCCHC17-3:2
4.0 lnc-ZCCHC17-3:2
4.1 lnc-ZCCHC17-3:2
5.0 lnc-ZCCHC17-3:2
5.1 LINC01778:11
5.2 LINC01778:22