Transcript: LINC01779:3

Basic information

LNCipedia transcript ID: LINC01779:3 
HGNC Gene Symbol: LINC01779    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1779
Ensembl Gene ID: ENSG00000235933
Ensembl Transcript ID: ENST00000426515
Location (hg38): chr1:116164284-116166241
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 914 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000282; ENST00000426515; ENST00000426515.1; RP5-1185H19.2-001; OTTHUMT00000033488.1; NONHSAT005407
Alternative gene names: XLOC_000362; linc-ATP1A1; ENSG00000235933; RP5-1185H19.2; ENSG00000235933.1; OTTHUMG00000012112.1; LINC01779


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.1947 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01779:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAB21L3-1:1
3.1 lnc-MAB21L3-1:1
4.0 lnc-MAB21L3-1:1
4.1 lnc-MAB21L3-1:1
5.0 lnc-MAB21L3-1:1
5.1 LINC01779:2
5.2 LINC01779:3