Transcript: LINC01780:17

Basic information

LNCipedia transcript ID: LINC01780:17 
HGNC Gene Symbol: LINC01780    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1780
Ensembl Gene ID: ENSG00000232650
Ensembl Transcript ID: ENST00000420059
Location (hg38): chr1:119328176-119330815
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 442 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000287; ENST00000420059; ENST00000420059.1; RP5-834N19.1-002; OTTHUMT00000034531.1; NONHSAT005554; ENST00000420059.5
Alternative gene names: XLOC_000370; linc-HAO2-1; ENSG00000232650; RP5-834N19.1; ENSG00000232650.1; OTTHUMG00000012409.1; ENSG00000232650.5; LINC01780


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.3825 non-coding 
CPAT coding probability 2.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01780:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HAO2-1:1
3.1 lnc-HAO2-1:1
4.0 lnc-HAO2-1:1
4.1 lnc-HAO2-1:1
5.0 lnc-HAO2-1:1
5.1 LINC01780:8
5.2 LINC01780:17