Transcript: LINC01781:13

Basic information

LNCipedia transcript ID: LINC01781:13 
HGNC Gene Symbol: LINC01781    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1781
Ensembl Gene ID: ENSG00000234184
Ensembl Transcript ID: ENST00000418041
RefSeq ID: NR_125941
Location (hg38): chr1:80535755-80646788
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 543 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000239; ENST00000418041; ENST00000418041.1; RP5-887A10.1-002; OTTHUMT00000001250.1; NR_125941; ENST00000418041.5; NR_125941.1
Alternative gene names: XLOC_000268; linc-LPHN2-1; ENSG00000234184; RP5-887A10.1; ENSG00000234184.1; OTTHUMG00000000507.1; ENSG00000234184.5; LINC01781; LOC101927412


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.6162 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01781:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPHN2-1:1
3.1 lnc-LPHN2-1:1
4.0 lnc-LPHN2-1:1
4.1 lnc-LPHN2-1:1
5.0 lnc-LPHN2-1:1
5.1 LINC01781:4
5.2 LINC01781:13