Transcript: LINC01781:16

Basic information

LNCipedia transcript ID: LINC01781:16 
HGNC Gene Symbol: LINC01781    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1781
Ensembl Gene ID: ENSG00000234184
Ensembl Transcript ID: ENST00000443565
Location (hg38): chr1:80641284-80646788
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 473 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000241; ENST00000443565; ENST00000443565.1; RP5-887A10.1-001; OTTHUMT00000001252.1; NONHSAT004121
Alternative gene names: XLOC_000268; linc-LPHN2-1; ENSG00000234184; RP5-887A10.1; ENSG00000234184.1; OTTHUMG00000000507.1; ENSG00000234184.5; LINC01781


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.6162 non-coding 
CPAT coding probability 8.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01781:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LPHN2-1:4
3.1 lnc-LPHN2-1:4
4.0 lnc-LPHN2-1:4
4.1 lnc-LPHN2-1:4
5.0 lnc-LPHN2-1:4
5.1 LINC01781:7
5.2 LINC01781:16