Transcript: LINC01782:6

Basic information

LNCipedia transcript ID: LINC01782:6 
LNCipedia gene ID: LINC01782
Location (hg38): chr19:32092690-32105916
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2624 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000513947; TCONS_00026845; NONHSAT064179
Alternative gene names: ENSG00000249027; XLOC_013299; linc-TSHZ3-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.4602 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01782:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ANKRD27-3:1
3.1 lnc-ANKRD27-3:1
4.0 lnc-ANKRD27-3:1
4.1 lnc-ANKRD27-3:1
5.0 lnc-ANKRD27-3:1
5.1 LINC01782:2
5.2 LINC01782:6