Transcript: LINC01787:3

Basic information

LNCipedia transcript ID: LINC01787:3 
HGNC Gene Symbol: LINC01787    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1787
Ensembl Gene ID: ENSG00000231987
Ensembl Transcript ID: ENST00000435311
RefSeq ID: NR_110693
Location (hg38): chr1:96254069-96374125
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1994 bp
Exons: 6
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00000585; ENST00000435311; ENST00000435311.1; RP5-898J17.1-001; OTTHUMT00000029470.2; NONHSAT004700; NR_110693; NR_110693.1
Alternative gene names: XLOC_000930; linc-ALG14-4; ENSG00000231987; RP5-898J17.1; ENSG00000231987.1; OTTHUMG00000010690.2; LINC01787; LOC101928241


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.5551 non-coding 
CPAT coding probability 4.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01787:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DPYD-4:1
3.1 lnc-DPYD-5:1
4.0 lnc-DPYD-5:1
4.1 lnc-DPYD-5:1
5.0 lnc-DPYD-5:1
5.1 LINC01787:2
5.2 LINC01787:3