Transcript: LINC01788:7

Basic information

LNCipedia transcript ID: LINC01788:7 
HGNC Gene Symbol: LINC01788    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1788
Ensembl Gene ID: ENSG00000229051
Ensembl Transcript ID: ENST00000419450
RefSeq ID: NR_125938
Location (hg38): chr1:70706453-70786468
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2086 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000419450; ENST00000419450.1; RP5-952N6.1-001; OTTHUMT00000025915.1; NONHSAT003865; NR_125938; NR_125938.1
Alternative gene names: ENSG00000229051; RP5-952N6.1; ENSG00000229051.1; OTTHUMG00000009349.1; LINC01788; LOC101927244

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.1036 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01788:7 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTH-1:1
3.1 lnc-CTH-1:1
4.0 lnc-CTH-1:1
4.1 lnc-CTH-1:1
5.0 lnc-CTH-1:1
5.1 LINC01788:3
5.2 LINC01788:7