Transcript: LINC01788:8

Basic information

LNCipedia transcript ID: LINC01788:8 
LNCipedia gene ID: LINC01788
Location (hg38): chr1:70706453-70786466
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2084 bp
Exons: 7
Sources: Broad Institute
Alternative transcript names: TCONS_00000044
Alternative gene names: XLOC_000246; linc-FPGT-12


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.1036 non-coding 
CPAT coding probability 0.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01788:8 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTH-1:2
3.1 lnc-CTH-1:2
4.0 lnc-CTH-1:2
4.1 lnc-CTH-1:2
5.0 lnc-CTH-1:2
5.1 LINC01788:4
5.2 LINC01788:8