Transcript: LINC01788:9

Basic information

LNCipedia transcript ID: LINC01788:9 
LNCipedia gene ID: LINC01788
Location (hg38): chr1:70760390-70786531
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1425 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000975; NONHSAT003867
Alternative gene names: XLOC_000246; linc-FPGT-12

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.9331 non-coding 
CPAT coding probability 0.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01788:9 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CTH-1:3
3.1 lnc-CTH-1:3
4.0 lnc-CTH-1:3
4.1 lnc-CTH-1:3
5.0 lnc-CTH-1:3
5.1 LINC01788:5
5.2 LINC01788:9