Transcript: LINC01793:3

Basic information

LNCipedia transcript ID: LINC01793:3 
HGNC Gene Symbol: LINC01793    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1793
Ensembl Gene ID: ENSG00000222030
Ensembl Transcript ID: ENST00000409590
RefSeq ID: NR_110219
Location (hg38): chr2:59217708-59279400
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2036 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000409590; ENST00000409590.1; AC007131.1-001; OTTHUMT00000327020.2; NONHSAT070869; NR_110219; NR_110219.1
Alternative gene names: ENSG00000222030; AC007131.1; ENSG00000222030.1; OTTHUMG00000152615.2; LINC01793; LOC101927285


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.7603 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01793:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VRK2-6:1
3.1 lnc-VRK2-6:1
4.0 lnc-VRK2-6:1
4.1 lnc-VRK2-6:1
5.0 lnc-VRK2-6:1
5.1 LINC01793:2
5.2 LINC01793:3