Transcript: LINC01798:17

Basic information

LNCipedia transcript ID: LINC01798:17 
LNCipedia gene ID: LINC01798
RefSeq ID: NR_110156
Location (hg38): chr2:66574030-66695588
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 765 bp
Exons: 6
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110156; NR_110156.1
Alternative gene names: LOC100507073


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -71.673 non-coding 
CPAT coding probability 18.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01798:17 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MEIS1-3:8
4.0 lnc-MEIS1-3:8
4.1 lnc-MEIS1-3:8
5.0 lnc-MEIS1-3:8
5.1 LINC01798:3
5.2 LINC01798:17