Transcript: LINC01799:5

Basic information

LNCipedia transcript ID: LINC01799:5 
HGNC Gene Symbol: LINC01799    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1799
Ensembl Gene ID: ENSG00000230525
Ensembl Transcript ID: ENST00000426260
Location (hg38): chr2:66904436-66971462
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 625 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426260; ENST00000426260.1; AC007403.2-002; OTTHUMT00000328263.1; NONHSAT071249; ENST00000426260.5
Alternative gene names: ENSG00000230525; AC007403.2; ENSG00000230525.1; OTTHUMG00000152853.1; ENSG00000230525.5; LINC01799


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -194.226 non-coding 
CPAT coding probability 23.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01799:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEIS1-5:1
3.1 lnc-MEIS1-5:1
4.0 lnc-MEIS1-5:1
4.1 lnc-MEIS1-5:1
5.0 lnc-MEIS1-5:1
5.1 LINC01799:2
5.2 LINC01799:5