Transcript: LINC01803:3

Basic information

LNCipedia transcript ID: LINC01803:3 
HGNC Gene Symbol: LINC01803    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1803
Ensembl Gene ID: ENSG00000228909
Ensembl Transcript ID: ENST00000438659
Location (hg38): chr2:219904051-219904889
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 613 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000438659; ENST00000438659.1; AC008281.1-001; OTTHUMT00000131980.2; NONHSAT077074
Alternative gene names: ENSG00000228909; AC008281.1; ENSG00000228909.1; OTTHUMG00000059377.2; LINC01803


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -182.1577 non-coding 
CPAT coding probability 1.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01803:3 no no no no

Available literature

  1. Ning (2014), SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DNPEP-1:1
3.1 lnc-DNPEP-1:1
4.0 lnc-DNPEP-1:1
4.1 lnc-DNPEP-1:1
5.0 lnc-DNPEP-1:1
5.1 LINC01803:2
5.2 LINC01803:3