Transcript: LINC01804:6

Basic information

LNCipedia transcript ID: LINC01804:6 
HGNC Gene Symbol: LINC01804    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1804
Ensembl Gene ID: ENSG00000231031
Ensembl Transcript ID: ENST00000492352
RefSeq ID: NR_110201
Location (hg38): chr2:15690782-15718961
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1871 bp
Exons: 6
Sources: Broad Institute; NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002688; NONHSAT069288; NR_110201; ENST00000492352.5; NR_110201.1
Alternative gene names: XLOC_001362; linc-MYCN-3; ENSG00000231031.6; AC008271.1; LINC01804; LOC101926966


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.6321 non-coding 
CPAT coding probability 4.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01804:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DDX1-2:1
3.1 lnc-DDX1-2:1
4.0 lnc-AC008271.1.1-2:4
4.1 lnc-AC008271.1.1-2:4
5.0 lnc-AC008271.1.1-2:4
5.1 LINC01804:2
5.2 LINC01804:6