Transcript: LINC01805:3

Basic information

LNCipedia transcript ID: LINC01805:3 
HGNC Gene Symbol: LINC01805    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1805
Ensembl Gene ID: ENSG00000223863
Ensembl Transcript ID: ENST00000436433
Location (hg38): chr2:64486353-64500904
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 572 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002907; ENST00000436433; ENST00000436433.1; AC008074.4-001; OTTHUMT00000327305.1; NONHSAT071118
Alternative gene names: XLOC_001497; linc-AFTPH; ENSG00000223863; AC008074.4; ENSG00000223863.1; OTTHUMG00000152676.1; LINC01805


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.5588 non-coding 
CPAT coding probability 25.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01805:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AFTPH-2:1
3.1 lnc-AFTPH-2:1
4.0 lnc-AFTPH-2:1
4.1 lnc-AFTPH-2:1
5.0 lnc-AFTPH-2:1
5.1 LINC01805:2
5.2 LINC01805:3