Transcript: LINC01806:25

Basic information

LNCipedia transcript ID: LINC01806:25 
HGNC Gene Symbol: LINC01806    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1806
Ensembl Gene ID: ENSG00000227403
Ensembl Transcript ID: ENST00000436506
Location (hg38): chr2:161244755-161247454
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 765 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003039; ENST00000436506; ENST00000436506.1; AC009299.3-002; OTTHUMT00000324254.1
Alternative gene names: XLOC_001728; linc-PSMD14; ENSG00000227403; AC009299.3; ENSG00000227403.1; OTTHUMG00000151885.1; LINC01806


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -234.2856 non-coding 
CPAT coding probability 2.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01806:25 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TANK-1:3
3.1 lnc-TANK-1:3
4.0 lnc-TANK-1:3
4.1 lnc-TANK-1:3
5.0 lnc-TANK-1:3
5.1 LINC01806:12
5.2 LINC01806:25