Transcript: LINC01807:3

Basic information

LNCipedia transcript ID: LINC01807:3 
HGNC Gene Symbol: LINC01807    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1807
Ensembl Gene ID: ENSG00000232023
Ensembl Transcript ID: ENST00000432481
Location (hg38): chr2:228483261-228611395
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 676 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432481; ENST00000432481.2; AC009410.1-001; OTTHUMT00000331758.2; NONHSAT077236
Alternative gene names: ENSG00000232023; AC009410.1; ENSG00000232023.2; OTTHUMG00000153589.2; LINC01807


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.6389 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01807:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PID1-2:1
3.1 lnc-PID1-2:1
4.0 lnc-PID1-2:1
4.1 lnc-PID1-2:1
5.0 lnc-PID1-2:1
5.1 LINC01807:2
5.2 LINC01807:3