Transcript: LINC01816:20

Basic information

LNCipedia transcript ID: LINC01816:20 
LNCipedia gene ID: LINC01816
RefSeq ID: NR_024444
Location (hg38): chr2:70124036-70125316
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 661 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024444; NR_024444.1
Alternative gene names: LOC100133985


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.6269 non-coding 
CPAT coding probability 31.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01816:20 no no no no

Available literature

  1. Tian (2017), Differentially Expressed lncRNAs in Gastric Cancer Patients: A Potential Biomarker for Gastric Cancer Prognosis., J Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C2orf42-1:5
4.0 lnc-C2orf42-1:5
4.1 lnc-C2orf42-1:5
5.0 lnc-C2orf42-1:5
5.1 LINC01816:9
5.2 LINC01816:20