Transcript: LINC01822:5

Basic information

LNCipedia transcript ID: LINC01822:5 
HGNC Gene Symbol: LINC01822    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1822
Ensembl Gene ID: ENSG00000229621
Ensembl Transcript ID: ENST00000435682
Location (hg38): chr2:21687434-21710623
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2098 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002747; ENST00000435682; ENST00000435682.1; AC018742.1-001; OTTHUMT00000324015.1
Alternative gene names: XLOC_002015; linc-APOB-7; ENSG00000229621; AC018742.1; ENSG00000229621.1; OTTHUMG00000151807.1; LINC01822


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.9128 non-coding 
CPAT coding probability 14.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01822:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-APOB-5:1
3.1 lnc-APOB-6:1
4.0 lnc-APOB-6:1
4.1 lnc-APOB-6:1
5.0 lnc-APOB-6:1
5.1 LINC01822:3
5.2 LINC01822:5