Transcript: LINC01823:8

Basic information

LNCipedia transcript ID: LINC01823:8 
HGNC Gene Symbol: LINC01823    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1823
Ensembl Gene ID: ENSG00000224655
Ensembl Transcript ID: ENST00000422238
Location (hg38): chr2:121790460-121795040
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 650 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422238; ENST00000422238.1; AC018737.3-001; OTTHUMT00000330763.1; NONHSAT074059; ENST00000422238.5
Alternative gene names: ENSG00000224655; AC018737.3; ENSG00000224655.1; OTTHUMG00000153333.1; ENSG00000224655.5; LINC01823


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.6748 non-coding 
CPAT coding probability 0.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01823:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSN-1:2
3.1 lnc-TSN-1:2
4.0 lnc-TSN-1:2
4.1 lnc-TSN-1:2
5.0 lnc-TSN-1:2
5.1 LINC01823:3
5.2 LINC01823:8