Transcript: LINC01827:9

Basic information

LNCipedia transcript ID: LINC01827:9 
LNCipedia gene ID: LINC01827
Ensembl Gene ID: ENSG00000271893
Ensembl Transcript ID: ENST00000606986
Location (hg38): chr2:195451778-195515699
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 503 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000606986.1
Alternative gene names: ENSG00000271893.1; RP11-762E8.1; AC064834.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.142 non-coding 
CPAT coding probability 3.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01827:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DNAH7-1:3
4.0 lnc-DNAH7-1:3
4.1 lnc-DNAH7-1:3
5.0 lnc-DNAH7-1:3
5.1 LINC01827:5
5.2 LINC01827:9