Transcript: LINC01828:28

Basic information

LNCipedia transcript ID: LINC01828:28 
HGNC Gene Symbol: LINC01828    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1828
Ensembl Gene ID: ENSG00000235885
Ensembl Transcript ID: ENST00000445514
RefSeq ID: NR_110568
Location (hg38): chr2:67213408-67244574
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 531 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000445514; ENST00000445514.1; AC023115.1-001; OTTHUMT00000328289.1; NONHSAT071272; NR_110568; NR_110568.1
Alternative gene names: ENSG00000230906; AC023115.1; ENSG00000230906.1; OTTHUMG00000152863.1; ENSG00000230906.2; ENSG00000235885.7; AC023115.2; LINC01828; LOC101927661


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -194.5382 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01828:28 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETAA1-4:1
3.1 lnc-ETAA1-3:1
4.0 lnc-ETAA1-5:11
4.1 lnc-ETAA1-5:11
5.0 lnc-ETAA1-5:11
5.1 LINC01828:8
5.2 LINC01828:28