Transcript: LINC01828:30

Basic information

LNCipedia transcript ID: LINC01828:30 
LNCipedia gene ID: LINC01828
Location (hg38): chr2:67260803-67289394
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 717 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00002927; ENST00000450294; ENST00000450294.1; AC023115.2-001; OTTHUMT00000328291.1; NONHSAT071273
Alternative gene names: XLOC_001512; linc-ETAA1-2; ENSG00000241455; AC023115.2; ENSG00000241455.1; OTTHUMG00000152865.2; ENSG00000235885.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.737 non-coding 
CPAT coding probability 1.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01828:30 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ETAA1-2:3
3.1 lnc-ETAA1-5:3
4.0 lnc-ETAA1-5:3
4.1 lnc-ETAA1-5:3
5.0 lnc-ETAA1-5:3
5.1 LINC01828:10
5.2 LINC01828:30