Transcript: LINC01829:44

Basic information

LNCipedia transcript ID: LINC01829:44 
HGNC Gene Symbol: LINC01829    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1829
Ensembl Gene ID: ENSG00000236780
Ensembl Transcript ID: ENST00000414404
Location (hg38): chr2:67175423-67215277
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003316; ENST00000414404; ENST00000414404.1; AC078941.1-002; OTTHUMT00000328267.1; NONHSAT071269
Alternative gene names: XLOC_002142; linc-SPRED2-11; ENSG00000236780; AC078941.1; ENSG00000236780.1; OTTHUMG00000152856.1; ENSG00000236780.5; LINC01829


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -237.8592 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01829:44 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1D-3:3
3.1 lnc-C1D-3:3
4.0 lnc-C1D-3:3
4.1 lnc-C1D-3:3
5.0 lnc-C1D-3:3
5.1 LINC01829:20
5.2 LINC01829:44