Transcript: LINC01833:41

Basic information

LNCipedia transcript ID: LINC01833:41 
HGNC Gene Symbol: LINC01833    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1833
Ensembl Gene ID: ENSG00000259439
Ensembl Transcript ID: ENST00000430847
Location (hg38): chr2:44929977-44935359
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 351 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430847.2; RP11-89K21.1-004; OTTHUMT00000419345.1
Alternative gene names: ENSG00000259439.1; RP11-89K21.1; OTTHUMG00000172199.2; ENSG00000259439.2; LINC01833


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.8038 non-coding 
CPAT coding probability 5.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01833:41 no no no no

Available literature

  1. Chen (2016), Detection and Analysis of Wnt Pathway Related lncRNAs Expression Profile in Lung Adenocarcinoma., Pathol. Oncol. Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SIX2-3:8
4.0 lnc-SIX2-3:8
4.1 lnc-SIX2-3:8
5.0 lnc-SIX2-3:8
5.1 LINC01833:20
5.2 LINC01833:41