Transcript: LINC01838:6

Basic information

LNCipedia transcript ID: LINC01838:6 
LNCipedia gene ID: LINC01838
Location (hg38): chr19:34905301-34908727
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1697 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026999; NONHSAT065658
Alternative gene names: XLOC_013046; linc-ZNF30-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.0047 non-coding 
CPAT coding probability 2.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01838:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF30-2:1
3.1 lnc-ZNF30-2:1
4.0 lnc-ZNF30-2:1
4.1 lnc-ZNF30-2:1
5.0 lnc-ZNF30-2:1
5.1 LINC01838:2
5.2 LINC01838:6