Transcript: LINC01838:7

Basic information

LNCipedia transcript ID: LINC01838:7 
HGNC Gene Symbol: LINC01838    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1838
Ensembl Gene ID: ENSG00000269037
Ensembl Transcript ID: ENST00000595783
Location (hg38): chr19:34905315-34908188
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1657 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000541350; ENST00000595783.1
Alternative gene names: ENSG00000256946; AC008555.4; ENSG00000269037.1; CTC-523E23.6; LINC01838


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7217 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01838:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF30-2:2
3.1 lnc-ZNF30-2:2
4.0 lnc-ZNF30-2:2
4.1 lnc-ZNF30-2:2
5.0 lnc-ZNF30-2:2
5.1 LINC01838:3
5.2 LINC01838:7