Transcript: LINC01838:9

Basic information

LNCipedia transcript ID: LINC01838:9 
LNCipedia gene ID: LINC01838
Location (hg38): chr19:34905318-34908186
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1652 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00026787
Alternative gene names: XLOC_013046; linc-ZNF30-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.7217 non-coding 
CPAT coding probability 2.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01838:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF30-2:3
3.1 lnc-ZNF30-2:3
4.0 lnc-ZNF30-2:3
4.1 lnc-ZNF30-2:3
5.0 lnc-ZNF30-2:3
5.1 LINC01838:5
5.2 LINC01838:9