Transcript: LINC01840:3

Basic information

LNCipedia transcript ID: LINC01840:3 
HGNC Gene Symbol: LINC01840    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1840
Ensembl Gene ID: ENSG00000230215
Ensembl Transcript ID: ENST00000421870
RefSeq ID: NR_046593
Location (hg38): chr3:184546714-184556918
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 571 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005903; ENST00000421870.1; EIF2B5-AS1-001; OTTHUMT00000345422.1; NONHSAT093729; NR_046593.1
Alternative gene names: XLOC_003355; linc-THPO-1; ENSG00000230215.1; EIF2B5-AS1; OTTHUMG00000156713.1; ; LINC01840


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.681 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01840:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAGEF1-2:1
3.1 lnc-MAGEF1-2:1
4.0 EIF2B5-AS1:1
4.1 EIF2B5-AS1:1
5.0 EIF2B5-AS1:1
5.1 LINC01840:2
5.2 LINC01840:3