Transcript: LINC01842:7

Basic information

LNCipedia transcript ID: LINC01842:7 
HGNC Gene Symbol: LINC01842    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1842
Ensembl Gene ID: ENSG00000267147
Ensembl Transcript ID: ENST00000588275
Location (hg38): chr19:14333743-14343916
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 768 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000588275.2
Alternative gene names: ENSG00000267147.2; CTC-548K16.1; LINC01842


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 1.3016 non-coding 
CPAT coding probability 4.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01842:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CD97-1:3
4.1 lnc-CD97-1:3
5.0 lnc-CD97-1:3
5.1 LINC01842:4
5.2 LINC01842:7