Transcript: LINC01843:10

Basic information

LNCipedia transcript ID: LINC01843:10 
LNCipedia gene ID: LINC01843
Location (hg38): chr5:134506552-134508724
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 602 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000515627; ENST00000515627.1; AC005355.2-001; OTTHUMT00000371545.1
Alternative gene names: ENSG00000251169; AC005355.2; ENSG00000251169.1; OTTHUMG00000163059.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3275 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01843:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHF15-1:1
3.1 lnc-PHF15-1:1
4.0 lnc-PHF15-1:1
4.1 lnc-PHF15-1:1
5.0 lnc-PHF15-1:1
5.1 LINC01843:2
5.2 LINC01843:10