Transcript: LINC01843:12

Basic information

LNCipedia transcript ID: LINC01843:12 
HGNC Gene Symbol: LINC01843    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1843
Ensembl Gene ID: ENSG00000251169
Ensembl Transcript ID: ENST00000515627
Location (hg38): chr5:134506552-134509229
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1107 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000515627.2
Alternative gene names: ENSG00000251169.2; AC005355.2; LINC01843


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3275 non-coding 
CPAT coding probability 14.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01843:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PHF15-1:4
4.0 lnc-PHF15-1:4
4.1 lnc-PHF15-1:4
5.0 lnc-PHF15-1:4
5.1 LINC01843:4
5.2 LINC01843:12