Transcript: LINC01843:17

Basic information

LNCipedia transcript ID: LINC01843:17 
LNCipedia gene ID: LINC01843
Location (hg38): chr5:134506614-134509229
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1045 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009259; NONHSAT103862
Alternative gene names: XLOC_004559; linc-PHF15-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3275 non-coding 
CPAT coding probability 14.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01843:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHF15-1:2
3.1 lnc-PHF15-1:2
4.0 lnc-PHF15-1:2
4.1 lnc-PHF15-1:2
5.0 lnc-PHF15-1:2
5.1 LINC01843:9
5.2 LINC01843:17