Transcript: LINC01847:7

Basic information

LNCipedia transcript ID: LINC01847:7 
HGNC Gene Symbol: LINC01847    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1847
Ensembl Gene ID: ENSG00000253311
Ensembl Transcript ID: ENST00000522627
RefSeq ID: NR_109891
Location (hg38): chr5:159776772-159871384
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 5607 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000522627; ENST00000522627.1; AC011343.1-001; OTTHUMT00000374082.1; NONHSAT104833; NR_109891.1
Alternative gene names: ENSG00000253311; AC011343.1; ENSG00000253311.1; OTTHUMG00000163544.1; ENSG00000253311.2; LINC01847; LOC101927766


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.8487 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01847:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PWWP2A-1:1
3.1 lnc-PWWP2A-1:1
4.0 lnc-PWWP2A-1:1
4.1 lnc-PWWP2A-1:1
5.0 lnc-PWWP2A-1:1
5.1 LINC01847:3
5.2 LINC01847:7