Transcript: LINC01852:13

Basic information

LNCipedia transcript ID: LINC01852:13 
LNCipedia gene ID: LINC01852
Location (hg38): chr15:38070867-38072987
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1186 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023631; NONHSAT041705
Alternative gene names: XLOC_011430; linc-MEIS2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5177 non-coding 
CPAT coding probability 6.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01852:13 no no no no

Available literature

  1. Chai (2016), Long noncoding RNA ENST00000434223 suppressed tumor progression in non-small cell lung cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASGRP1-3:1
3.1 lnc-RASGRP1-4:1
4.0 lnc-RASGRP1-4:1
4.1 lnc-RASGRP1-4:1
5.0 lnc-RASGRP1-4:1
5.1 LINC01852:2
5.2 LINC01852:13