Transcript: LINC01852:22

Basic information

LNCipedia transcript ID: LINC01852:22 
HGNC Gene Symbol: LINC01852    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1852
Ensembl Gene ID: ENSG00000236914
Ensembl Transcript ID: ENST00000560819
Location (hg38): chr15:38071627-38072090
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 464 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560819.1; RP11-1008C21.2-002; OTTHUMT00000418182.1; NONHSAT041707
Alternative gene names: ENSG00000236914.3; RP11-1008C21.2; OTTHUMG00000172374.1; LINC01852


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.138 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01852:22 no no no no

Available literature

  1. Chai (2016), Long noncoding RNA ENST00000434223 suppressed tumor progression in non-small cell lung cancer., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RASGRP1-4:7
4.0 lnc-RASGRP1-4:7
4.1 lnc-RASGRP1-4:7
5.0 lnc-RASGRP1-4:7
5.1 LINC01852:11
5.2 LINC01852:22