Transcript: LINC01854:17

Basic information

LNCipedia transcript ID: LINC01854:17 
LNCipedia gene ID: LINC01854
RefSeq ID: NR_122041
Location (hg38): chr2:129242173-129273891
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2168 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_122041; NR_122041.1
Alternative gene names: LOC151121


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 9.5757 non-coding 
CPAT coding probability 15.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01854:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-POTEF-5:2
4.0 lnc-POTEF-5:2
4.1 lnc-POTEF-5:2
5.0 lnc-POTEF-5:2
5.1 LINC01854:8
5.2 LINC01854:17