Transcript: LINC01856:3

Basic information

LNCipedia transcript ID: LINC01856:3 
HGNC Gene Symbol: LINC01856    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1856
Ensembl Gene ID: ENSG00000237574
Ensembl Transcript ID: ENST00000450840
RefSeq ID: NR_110285
Location (hg38): chr2:129923177-129946703
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2398 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000450840; ENST00000450840.1; AC079776.3-001; OTTHUMT00000331345.1; NONHSAT074249; NR_110285; NR_110285.1
Alternative gene names: ENSG00000237574; AC079776.3; ENSG00000237574.1; OTTHUMG00000153485.1; LINC01856; LOC101927924


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4343 non-coding 
CPAT coding probability 24.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01856:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RAB6C-1:1
3.1 lnc-RAB6C-1:1
4.0 lnc-RAB6C-1:1
4.1 lnc-RAB6C-1:1
5.0 lnc-RAB6C-1:1
5.1 LINC01856:2
5.2 LINC01856:3