Transcript: LINC01857:11

Basic information

LNCipedia transcript ID: LINC01857:11 
LNCipedia gene ID: LINC01857
Location (hg38): chr2:207662254-207679116
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5937 bp
Exons: 13
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT076616; FPKM1_group_18197_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.3248 non-coding 
CPAT coding probability 0.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01857:11 no no no no

Available literature

  1. Zhao (2017), Significance of genetic polymorphisms in long non-coding RNA AC079767.4 in tuberculosis susceptibility and clinical phenotype in Western Chinese Han population., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCNYL1-1:2
4.0 lnc-CCNYL1-1:2
4.1 lnc-CCNYL1-1:2
5.0 lnc-CCNYL1-1:2
5.1 LINC01857:2
5.2 LINC01857:11