Transcript: LINC01857:12

Basic information

LNCipedia transcript ID: LINC01857:12 
HGNC Gene Symbol: LINC01857    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1857
Ensembl Gene ID: ENSG00000224137
Ensembl Transcript ID: ENST00000429730
Location (hg38): chr2:207662375-207667024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 492 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429730; ENST00000429730.1; AC079767.4-001; OTTHUMT00000337055.1; NONHSAT076617
Alternative gene names: ENSG00000224137; AC079767.4; ENSG00000224137.1; OTTHUMG00000154786.1; LINC01857


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.8231 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01857:12 no no no no

Available literature

  1. Zhao (2017), Significance of genetic polymorphisms in long non-coding RNA AC079767.4 in tuberculosis susceptibility and clinical phenotype in Western Chinese Han population., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCNYL1-1:1
3.1 lnc-CCNYL1-1:1
4.0 lnc-CCNYL1-1:1
4.1 lnc-CCNYL1-1:1
5.0 lnc-CCNYL1-1:1
5.1 LINC01857:3
5.2 LINC01857:12