Transcript: LINC01857:13

Basic information

LNCipedia transcript ID: LINC01857:13 
LNCipedia gene ID: LINC01857
Location (hg38): chr2:207662378-207667024
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 489 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224137.1|ENST00000429730.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -83.8231 non-coding 
CPAT coding probability 2.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01857:13 no no no no

Available literature

  1. Zhao (2017), Significance of genetic polymorphisms in long non-coding RNA AC079767.4 in tuberculosis susceptibility and clinical phenotype in Western Chinese Han population., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CCNYL1-1:3
5.0 lnc-CCNYL1-1:3
5.1 LINC01857:4
5.2 LINC01857:13