Transcript: LINC01861:3

Basic information

LNCipedia transcript ID: LINC01861:3 
HGNC Gene Symbol: LINC01861    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1861
Ensembl Gene ID: ENSG00000251183
Ensembl Transcript ID: ENST00000509568
Location (hg38): chr5:153887428-153898987
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009805; ENST00000509568; ENST00000509568.1; AC091962.3-001; OTTHUMT00000373758.1; NONHSAT104666
Alternative gene names: XLOC_005057; linc-NMUR2-2; ENSG00000251183; AC091962.3; ENSG00000251183.1; OTTHUMG00000163488.1; LINC01861


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.2026 non-coding 
CPAT coding probability 5.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01861:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM114A2-1:1
3.1 lnc-FAM114A2-1:1
4.0 lnc-FAM114A2-1:1
4.1 lnc-FAM114A2-1:1
5.0 lnc-FAM114A2-1:1
5.1 LINC01861:2
5.2 LINC01861:3