Transcript: LINC01866:3

Basic information

LNCipedia transcript ID: LINC01866:3 
HGNC Gene Symbol: LINC01866    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1866
Ensembl Gene ID: ENSG00000237670
Ensembl Transcript ID: ENST00000421181
Location (hg38): chr2:16970034-16974497
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 201 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000421181; ENST00000421181.1; AC080094.1-001; OTTHUMT00000323741.1; NONHSAT069347; FPKM1_group_15402_transcript_1
Alternative gene names: ENSG00000237670; AC080094.1; ENSG00000237670.1; OTTHUMG00000151745.1; LINC01866


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.0907 non-coding 
CPAT coding probability 1.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01866:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSNL1-3:1
3.1 lnc-VSNL1-3:1
4.0 lnc-VSNL1-3:1
4.1 lnc-VSNL1-3:1
5.0 lnc-VSNL1-3:1
5.1 LINC01866:2
5.2 LINC01866:3