Transcript: LINC01868:3

Basic information

LNCipedia transcript ID: LINC01868:3 
HGNC Gene Symbol: LINC01868    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1868
Ensembl Gene ID: ENSG00000234169
Ensembl Transcript ID: ENST00000414965
Location (hg38): chr2:100669892-100676038
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003340; ENST00000414965; ENST00000414965.1; AC092168.3-001; OTTHUMT00000329809.1; NONHSAT072787
Alternative gene names: XLOC_002223; linc-CHST10-1; ENSG00000234169; AC092168.3; ENSG00000234169.1; OTTHUMG00000153160.1; LINC01868


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.5715 non-coding 
CPAT coding probability 1.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01868:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CHST10-1:1
3.1 lnc-CHST10-1:1
4.0 lnc-CHST10-1:1
4.1 lnc-CHST10-1:1
5.0 lnc-CHST10-1:1
5.1 LINC01868:2
5.2 LINC01868:3