Transcript: LINC01869:29

Basic information

LNCipedia transcript ID: LINC01869:29 
HGNC Gene Symbol: LINC01869    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1869
Ensembl Gene ID: ENSG00000180279
Ensembl Transcript ID: ENST00000326989
RefSeq ID: NR_038359
Location (hg38): chr19:50817681-50818878
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 936 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT067373; NR_038359; ENST00000326989.5; NR_038359.1
Alternative gene names: ENSG00000180279.5; CTD-2568A17.5; ENSG00000180279.6; MGC45922; LINC01869


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.3323 non-coding 
CPAT coding probability 25.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01869:29 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC010325.1-1:6
4.0 lnc-AC010325.1-1:6
4.1 lnc-AC010325.1-1:6
5.0 lnc-AC010325.1-1:6
5.1 LINC01869:14
5.2 LINC01869:29