Transcript: LINC01870:3

Basic information

LNCipedia transcript ID: LINC01870:3 
HGNC Gene Symbol: LINC01870    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1870
Ensembl Gene ID: ENSG00000223826
Ensembl Transcript ID: ENST00000427042
Location (hg38): chr2:101479390-101486822
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 390 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002954; ENST00000427042; ENST00000427042.1; AC092570.2-001; OTTHUMT00000339799.1; NONHSAT072828
Alternative gene names: XLOC_001593; linc-MAP4K4; ENSG00000223826; AC092570.2; ENSG00000223826.1; OTTHUMG00000155390.1; LINC01870


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -358.2275 non-coding 
CPAT coding probability 16.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01870:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C2orf29-2:1
3.1 lnc-C2orf29-2:1
4.0 lnc-C2orf29-2:1
4.1 lnc-C2orf29-2:1
5.0 lnc-C2orf29-2:1
5.1 LINC01870:2
5.2 LINC01870:3