Transcript: LINC01872:10

Basic information

LNCipedia transcript ID: LINC01872:10 
HGNC Gene Symbol: LINC01872    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1872
Ensembl Gene ID: ENSG00000268318
Ensembl Transcript ID: ENST00000600813
Location (hg38): chr19:51271399-51281131
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000600813.1
Alternative gene names: ENSG00000268318.1; CTD-3187F8.11; ENSG00000268318.5; LINC01872


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.6964 non-coding 
CPAT coding probability 59.36% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01872:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C19orf75-2:4
4.0 lnc-C19orf75-2:4
4.1 lnc-C19orf75-2:4
5.0 lnc-C19orf75-2:4
5.1 LINC01872:6
5.2 LINC01872:10