Transcript: LINC01873:3

Basic information

LNCipedia transcript ID: LINC01873:3 
HGNC Gene Symbol: LINC01873    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1873
Ensembl Gene ID: ENSG00000232164
Ensembl Transcript ID: ENST00000428647
RefSeq ID: NR_130931
Location (hg38): chr2:66383306-66392450
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1679 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000428647; ENST00000428647.1; AC092669.3-001; OTTHUMT00000328010.2; NONHSAT071221; NR_130931.1
Alternative gene names: ENSG00000232164; AC092669.3; ENSG00000232164.1; OTTHUMG00000152809.2; LINC01873; LOC729348


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.8138 non-coding 
CPAT coding probability 52.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01873:3 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MEIS1-1:1
3.1 lnc-MEIS1-1:1
4.0 lnc-MEIS1-1:1
4.1 lnc-MEIS1-1:1
5.0 lnc-MEIS1-1:1
5.1 LINC01873:2
5.2 LINC01873:3