Transcript: LINC01875:3

Basic information

LNCipedia transcript ID: LINC01875:3 
HGNC Gene Symbol: LINC01875    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1875
Ensembl Gene ID: ENSG00000225942
Ensembl Transcript ID: ENST00000454477
Location (hg38): chr2:545805-546667
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 660 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002791; ENST00000454477; ENST00000454477.1; AC093326.2-001; OTTHUMT00000322386.1; NONHSAT068561
Alternative gene names: XLOC_001307; linc-SNTG2-5; ENSG00000225942; AC093326.2; ENSG00000225942.1; OTTHUMG00000151361.1; LINC01875


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.3154 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01875:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ACP1-7:1
3.1 lnc-ACP1-8:1
4.0 lnc-ACP1-8:1
4.1 lnc-ACP1-8:1
5.0 lnc-ACP1-8:1
5.1 LINC01875:2
5.2 LINC01875:3